Category Archives: Safety

The Company Joules

We will soon have a new HEL Phi-TEC Adiabatic Reaction Calorimeter up and running. Hopefully this will help solve some nagging questions I have about the thermal stability of certain compounds. Time to maximum rate (TMR) is a useful parameter and ARC testing helps to find this value.

I have spent  a good deal of time with the Mettler-Toledo RC1 and have found it to be very useful in process development. There is a tendency for chemists to design exothermic reactions to start at low temperature and at perhaps some point raise the temperature to take the reaction to completion. The RC1 will indicate accumulation of energy in a vessel following a charge. By varying the temperature of the reaction mass and modulating the dosing rate it is possible to find a reaction temperature and feed rate that affords a steady state (or manageable, at least) output of power with minimal energy accumulation.

With the reactions I have been studying it has become apparent that sometimes a preference for low temperature (-30 C to 0 C) by the chemist may in fact be based on habit rather than need.

Naturally, the thermal picture is not the entirety of the problem. Product stability in the reaction mass and residence time at temperature play a role in how the process is configured. But a reaction calorimeter can help find threshold temperatures below which the reaction substantially shuts down.

The RC1 measures heat of reaction in Joules and power in Watts. After some time on the instrument one comes to view a reaction mass as a power generator or an absorber. Power is reported in Watts and is indicated by the magnitude of the deflection of the power curve from baseline.  Joules of energy are calculated from the area under the power curve.

The instrument has a calibration routine where it determines the Cp of the vessel contents. If you have the reaction mass, heat of reaction, and Cp, you can calculate the adiabatic temperature rise for a given dose of reactant. This is an extremely useful element in sketching out the safe operating parameter space of a reaction.

Safety is a political concept. Safety has no basis in physics. It is an artifact of anthropology. It is a fuzzy construct defined by a magnitude of “likelihood” and type of consequence individuals and organizations are willing to absorb to obtain a particular outcome.  But when you sit down in a meeting with thermokinetic data and solid interpretation, all of the stakeholders in a plant can brainstorm and home in on a fairly rational and agreed upon process profile. This is politics at its finest- data driven and substantially rational.

What a Meth Lab is Not

It is time that someone questions the use of the phrase “meth lab”. Just as a cook would object to the phrase “meth kitchen”,  those of us who spend our careers in the laboratory should push back on the use of the word “lab” in this manner.  The use of this word confers the notion that a workspace is fitted for chemical handling activity and is operated by someone who knows what they are doing. Dubbing a meth operation as laboratory surrenders too much credit to the operator. These people are moonshiners skulking around on the periphery of society.

A meth lab is not a lab. It is the workshop of a criminal enterprise where unscrupulous people manufacture a dangerous substance. Its sole purpose is to profit from the uncontrollable neurological train wreck of methamphetamine addiction. This is not laboratory work. It’s just crime.

ChemSpider Magic with LASSO

Of late I have been concerned with R&D information and various homebrew means of storing it and retrieving it. Institutionalizing R&D results into easily accessed knowledge can roll into a real hairball if you’re not careful. More on that another time.

My adventures with CHETAH 9.0 have caused me to look deeply into SMILES strings and what utility might be found there. This lead me to rediscover ChemSpider and the many services it provides for free to the user.

Consider the following: if you generate a SMILES structure of acetylsalicylic acid, say, from Chemdraw, O=C(O)C1=C(OC(C)=O)C=CC=C1, and use this character string as a search term in ChemSpider, it will take you to the entry for aspirin. What you get is a treasure trove of information on this substance. Go to ChemSpider, cut and paste the above SMILES string into the search box, and let her rip. I’m not your Momma. Just try it.

The breadth of references is encyclopedic.  But the truly amazing part is found when you scroll to the end of the page. There is a drop down window for SimBioSys LASSO. ChemSpider is working to provide LASSO data on its large database of compounds.  LASSO generates a structure and grinds it through a neural net processor module and produces a score between zero and one. The closer the score is to 1.00, the greater the surface conformity or compatibility of the ligand to a target receptor site.  As you would expect, there is a high score associated with aspirin and the COX-1 receptor. From what I can tell, the software is self-learning in some fashion.

The uses are many. Substances can be screened for drug-like attributes within the 40 receptor types provided.  I would like to hear from someone who might have something to say about the use of LASSO for the estimation of possible toxic effects of substances that have not been biologically tested. I fully realize the hazards of this, but perhaps LASSO scores might help flag particular substances for closer examination by testing.

CT Scans. Who is monitoring a patient’s radiation dose?

The matter of medical x-radiation dosing is surfacing again. I wrote a post about this in 2009.

Let’s get to the core of the matter. Physicians need to take charge of this since only they have any real control. It’s a pretty goddamned simple concept. Doc’s who are calling for x-ray’s need to begin recording calculated dosing from this hazardous energy. If it is too troublesome for them, then the x-ray techs should record the information.

CT scanning seems to be problematic. There is no business incentive to hold back on CT use in for-profit settings. I suppose that documentation would only reveal the extent and magnitude of x-ray use. It would be fodder for malpractice law firms.

I can just see the billboards- Have you or a loved one ever gotten a tan from x-rays? If you have, call Dooleysquat, Schwartz and Schmuck for a free consultation. Do it Now!

Chemistry Lab Accidents Reports from the Chemical Safety Board.

Here is a link to a US Chemical Safety Board video summarizing several recent lab accidents.  If you have never visited or heard of the CSB, here is a link to their web site. Have a look around.

This link is to the case CSB case Study of the Texas Tech explosion with nickel hydrazine perchlorate. It has a nice illustration of the Swiss Cheese Model of safety. This model was devised by British Psychologist James T. Reason at the University of Manchester in 1990.

Academic Lab Due Diligence Post-Sangji

A colleague and I were discussing the Sangji case off-line and I did what I am pathologically prone to do which is to blurt out suggestions.  I’m passing them along to my other friends out in the ether as a rough guideline to thinking about training and due diligence. My suggestions are merely a watered down version of a typical industrial EH&S SOP.

Due Diligence

Your university EH&S department no doubt has some some form of written policy, but having your own arrangement with your student workers will accomplish two things for you- 1) you will have written and signed documentation on having trained your students to use what you might call, if not “best practices”, then “reasonable and ordinary practices” in the lab, and 2) you will have made it perfectly clear to them what kind of expectations you have in regard to their work practices, open lab times, types of activities they may perform unsupervised by you, and your absolute dedication to lab worker safety.

In a civil or criminal action you will be under court order to surrender your documents in a process called “discovery”. Your attorney, being an officer of the court, is legally obligated to ensure that you surrender all of your documentation related to the action.

So, wouldn’t it be useful to surrender documentation of your diligence in all matters of safety?

Making a student or other lab worker’s activity in your lab contingent upon some basic operating rules is not at all unreasonable. And, if the rules are clearly written with consequences for violation of policies, then everyone knows the expectations.

No one can predict the future. But what you can do is some due diligence. Have a written training program with goals and scope. Run your research students and other coworkers through it every year and have them sign off on their attendance. Put it in a file and hope that you never have to pull it out in self-defense.

Such a program would be a solid basis for your defense attorney to argue that you went to reasonable measures to train students on escape plans, shower and eye wash use, sharps, proper PPE, fire extinguisher use, lab hygiene, proper storage, and special techniques to use when handling reactive/toxic/corrosive/flammable materials.

A policy on the amount of flammable materials you have in your lab space is a good thing as is a policy of segregating chemicals in storage according to their flammability and corrosiveness.

Get a signature from coworkers on the policies as well and file it away. I think this is critical. Give a copy of your policies and training plan to the department chairman.

Possible Blowback

Once you have given instruction on your policies, collected all of the signatures, and neatly filed them away, the hard part begins. You must be consistent in enforcing the policies. You have to tear yourself away from the word processor and make periodic safety inspections. If you’re off to a week-long NSF study session, a proxy should be appointed to monitor your labs.

The last thing you want is to have a plan that crumbles under scrutiny. You want to have a gap free history of due diligence.  Former coworkers may be called to testify as to your enforcement of safety rules. Nothing rings hollow like a safety plan that was constructed only for show.

Benefit

A benefit to all of this due diligence is that you may have actually made your lab a safer place to work and have instilled a level-headed safety mentality in your coworkers. Fancy that.

The Sheri Sangji Case

Many readers know that research assistant Sheri Sangji died from burns sustained in a laboratory fire in the lab of UCLA professor Patrick Harran. Harran and university Regents are up on felony charges for their part in the incident. I understand that the charges are based on occupational health and safety violations related to the incident.

[The excellent blog Chemjobber has been following this story.  I might add that this blog should be put on your Favorites list if it isn’t already there. The author puts a lot of work into it and it shows.]

Sangji was transferring t-butyllithium when her plastic syringe came apart and a quantity of the pyrophoric solution was splashed on her and ignited. She sustained fatal burns when her clothing caught fire and she died 18 days later.

Syringe techniques are common and the use of plastic syringes in such transfers of lithium alkyls is not unusual or automatically over-dangerous. However, some syringes have what is called a Luer tip where a syringe needle is attached solely by friction.

Another design has a Luer lock where the needle is affixed with a twist of the needle into a friction lock.  The former design, with the tubular tip and no locking mechanism is prone to disconnection under tension and on withdrawl of the needle from the septum on a pressurized bottle, the needle is likely to squirt bottle contents onto the worker. The Luer lock largely prevents this type of accident.

Another failure mode is when the plunger is inadvertantly withdrawn completely from the barrel of the syringe. Minimally, this would release the contents from the barrel, possibly on the operator. If the plunger is pulled completely out while the needle is still in a pressurized bottle, a fountain of liquid may discharge, possibly on the operator.

Syringe plungers with a rubber tip are prone to swelling in organic solvents and may become difficult to move during a single use. If the plunger is pulled with great force, it might release suddenly causing it to come out of the barrel along with the contents.

Other syringes have plungers that provide a seal by plastic-on-plastic pressure. The seal depends on the elasticity of the barrel to accomodate the slightly oversized plunger. These syringes do not come with Luer locks and as such, are not forgiving of less than skillful use.

I do not know exactly what technique Sangji was using. Aldrich distributes literature on the use of a cannula in the transfer of air sensitive liquids. That is fine, but if you want 0.1 to 60 mL of RLi, a syringe is the most expeditious method for delivering a precise aliquot in my opinion.

Experimentalists are often stricken with a cowboy mentality. If you have never had a serious incident with a material, it is easy to get a bit cavalier. But handling metal alkyls is a lot like handling rattle snakes- you have to be careful every single time.

A subsequent post offers suggestions on due diligence for ressearch professors.

Process development with calorimetry

I’ve turned my attention to reaction calorimetry recently. A reaction calorimeter (i.e.,  Mettler-Toledo RC1) is an apparatus so constructed as to allow the reaction of chemical substances with the benefit of measuring the heat flux evolved. Reaction masses may absorb heat energy from the surroundings (endothermic) or may evolve heat energy into the surroundings (exothermic).

Calorimetry has been around for a very long time. What is relatively recent is the development of instrumentation, sensor, and automation packages that are sufficiently user friendly that RC can be plausibly used by people like me: chemists who are assigned to implement a technique new to the organization.  What I mean by “user friendly” is not this: an instrument that requires the full time attention of a specialist to operate and maintain it.

A user friendly instrument is one engineered and automated to the extent that as many adjustments as possible are performed by the automation and that the resulting sysem is robust enough that operational errors and conflicting settings are flagged prior to commencing a run.  A dandy graphic user interface is nice too. Click and drag has become a normal expectation of users.

An instrument that can be operated on demand by existing staff is an instrument that nullifies the need for specialists. Not good for the employment of chemists, but normal in the eternal march of progress. My impression is that RC is largely performed by dedicated staff in safety departments. What the MT RC1 facilitates is the possibility for R&D groups to absorb this function and bring the chemists closer to the thermal reality of their processes. Administratively, it might make more sense for an outside group to do focus on process safety, however.

In industrial chemical manufacture the imperative is the same as for other capitalistic ventures- manufacture the goods with minimal cost inputs to provide acceptable quality. Reactions that are highly exothermic or are prone to initiation difficulties are reactions that may pose operational hazards stemming from the release of hazardous energy.  A highly exothermic reaction that initiates with difficulty- or at temperatures that shrink the margin of safe control- is a reaction that should be closely studied by RC, ARC, and DSC.

It is generally desirable for a reaction to initiate and propagate under positive administrative and engineeering controls. Obviously, it is desirable for a reaction to be halted by the application of such controls. Halting or slowing a reaction by adjustment of feed rate or temperature is a common approach.  For second order reactions, the careful metering of one reactant to the other (semi-batch) is the most common approach to control of heat evolution.

For first order reactions, control of heat evolution is had by control of the concentration of unreacted compound or by brute force management of heating and cooling.

Safe operation of chemical processing is about controlling the accumulated energy in the reactor. The accumulated energy is the result of accumulated unreacted compounds. Some reactions can be safely conducted in batch form, meaning that all of the reactants are charged to the reactor at once. At t=0, the accumulation of energy is 100 %. A reliable and properly designed heat exchange system is required for safe operation (see CSB report on T2). In light of T2, a backup cooling system or properly designed venting is advised.

The issue I take with the designers of the process performed at T2 is this: They chose to concentrate the accumulated energy by running the reaction as a batch process. This is a philosphical choice. The reaction could have been run as a semibatch process by feeding the MeCp to the Na with a condenser on the vessel. Control of the exotherm could have been had by control of the feed rate and clever use of the evaporative endotherm. A properly sized vent with rupture disc should always be used. These are three layers of protection. 

Instead, they chose on a batchwise process relying on a now obviously inadequate pressure relief system, and the proper functioning of water to the jacket.

No doubt the operators of the facility were under price and schedule pressure. The MeCp manganese carbonyl compound they were making is an anti-knock additive for automotive fuels and therefore a commodity product. I have no doubt at all that their margins may have been thin and that resources may not have been there to properly engineer the process. This process has “expedient” written all over it in my view.

Reactions that have a latent period prior to noticeable reaction are especially tricky. Often such reactions can be rendered more reliable by operation at higher temperatures. Running exothermic reactions at elevated temperatures is somewhat counter-intuitive, but the issue of accumulation may be solved.  

Disclaimer: The opinions expressed by Th’ Gaussling are his own and do not necessarily represent those of employers past or present (or future).