Dark Sky

One year ago a couple of us from the observatory gave a presentation before our town board in support of an ordinance for outdoor lighting. The proposal was along the lines of that used by the city of Tucson, AZ. It is really just a type of tweaking of the town architectural standards and is promoted by IDA, the International Dark Sky Association.

A draft of the document was developed and approved by the town board of trustees just tonight. It will come up for a vote in the next meeting. Based on tonights meeting, it should pass readily.

This is the first time a law has been passed where Th’ Gaussling wasn’t some kind of negative example.  Maybe I should have spent my 15 minutes of fame in some other way. Hmmm.

And then I woke up

And it came to pass that a Being appeared to Th’ Gaussling one afternoon in the laboratory. But this was not a Being in the league of the Angel Michael or Gabriel. This was a somewhat lesser Being. Call him “Ed”. 

While Th’ Gaussling was tending to some matter in the lab, the Being Ed made his presence known by speaking through the vacuum line.

Gauss-ling“, hissed the disembodied voice through the Buchner filter.

Gaussling startled, dropping a few grams of precious crystals on the benchtop, and looked in full circle around him trying to find the source of the voice.  Puzzled, Gaussling stood still for a few moments listening for more sound and then, with a shrug, began to clean up the mess.

“Gaussling, I’m down here” said the voice, a bit more impatiently. “Set the spatula down and look in the filter”.

Sensing a practical joke, Gaussling replied sarcastically “Bugger off! I’m busy. Buncha NIM-rods …”.

With unmistakable urgency, the voice commanded “Look in the Filter!” At that moment, the vacuum pump changed its sound to a quiet tap-tap-tap, indicating that the pressure had dropped. The mercury column in the manometer collapsed and the pump noise became just a whisper.

Gaussling promptly stopped what he was doing and leaned towards the Buchner filter while scanning sideways for pranksters. But the room was empty and the voice had a decidedly raspy edge to it now. As Gaussling peered into the filter he noticed that a voice appeared to eminate from the vibrating filter paper. As the funnel spoke, crystal fragments danced across the flat paper like rice on a snare drum. Gaussling froze and couldn’t manage a breath.

“What do you want?”, Gaussling gasped.  “How can this be happening? Who are you?”

“You may call me Ed. Some of your kind have referred to my species as ‘Angel’ “, Ed replied matter-of-factly. “I think you’ll find that description to be inaccurate.” 

At that moment Ed apparated beside Gaussling in front of the fume hood. There was a rattling pop and the crackle of static discharge with a brown puff of nitrogen dioxide and ozone. Disconcertingly to the traveler, this type of conveyance caused the accumulation of static charge. Gaussling momentarily wondered how many Coulombs of static an Angel could withstand, but then snapped back to matter at hand. 

Still quite shocked, Th’ Gaussling managed to squeek out a few questions. “How did you do that? Where are you from? What do you mean by Angel?”

Ed was always annoyed with such questions. The gosh-wow-sense-of-wonder reaction from these creatures wore thin after a while. As Ed took a moment to adapt to the atmosphere and the pressure, Gaussling looked up and down at the visitor.  It was apparently a he from the outward mannerisms and dress.  Gaussling wouldn’t push the issue of gender right away.

“Dear fellow” Ed said in an impatient and distinctly British tone, “would you kindly relax and set that bottle down? I need to speak with you.  I’m only able to stay for a moment. This kind of travel causes extreme parity violations in the cosmos and is possible only by rather large energy consumption elsewhere, not to mention great discomfort for me.”

“So, you’re Ed? ” Gaussling said awkwardly. “What are you doing here?”

“I have a gift for you,” Ed replied in a matter of fact tone and reached inside his vest. “In fact, here it is.”

Ed pulled out a small vial that appeared to be of glass construction. At the bottom of the glass vial was a powder. It was unremarkable in every way and initially resembled ten thousand other colorless powders.

Ed held up the small vial and grinned. “See, here it is. Oh, my my my. You are going to be very amused.” He could barely contain his glee. Ed held the vial up toward the light but now the powder appeared somewhat different. Gaussling thought he saw a faint iridescent glint to it. A flash of a shimmer of spectrum against the cold fluorescent lights.

“I have come a long distance to give this to you. It is a substance capable of great wonders for those with the curiosity and wisdom to use it properly. But it is also capable of doing great harm. Soon you will see.”

Gaussling stood there, attentive but unable to utter a single word. After a few moments, Gaussling sputtered “What does it do?” 

Ed stood for a moment and then gushed with great delight, “I though you’d never ask. Get me a flask with some liquid in it, any liquid.”

Gaussling grabbed a 250 mL beaker and splashed a bit of acetone in it- 50 mL or so. Gaussling handed the beaker to Ed.

“Gaussling, I am going to put a single crystal of this substance into your liquid. Watch …” And with that fluorish, Ed expertly shook a single crystal of this substance into the beaker. The result was immediate and spectacular.

As Gaussling watched in amazement, the list of uses washed over his mind like a storm surge over a levee.  “How can this be happening?” Gaussling gasped.

Sugammadex Buzz for Organon

There is a new kind of buzz in the anesthesia community these days. News of a “selective” muscle relaxant binding agent hit the web in a big way. Even Forbes made notice. Sugammadex, a proprietary cyclodextrin available from Organon, has the ability to bring post-operative patients out from under the influence of muscle relaxant drugs rapidly and safely. It does this by host-guest coordination of drug molecules in the blood stream, effectively lowering the blood titer of active drug. The cyclodextrin acts as a kind of sheath or molecular condom to prevent binding of the certain active relaxant drugs to the receptors. The results are apparently startling to the numbing and gas passing community. 

Patents as Publications?

At a conference a few years ago I was discussing chemistry over gin and tonics with an assoc. prof from the University of XYZ. This fellow was one of the solid journeyman chemists in our field with a good eye for projects and opportunity, but like most of us, he is a warm-up band and not a headliner.  Eventually, the prof confided that he was patenting his work partly to extend his publication list- like sawdust in flour.  He had done some interesting work with a late transition metal. As the evening wore on, I could see the fire of gold fever in his eyes.  He believed that his patents would bring a stream of money and notoriety to his program. It’s natural.

Big things can happen with university IP. Some universities have substantial royalty streams filling their coffers. The institutions are able to capture value from the inventiveness of their faculty and students. When it works, it can fund new buildings, institutes, chaired faculty, and a horde of students and post-docs. When it doesn’t work, and most patents do not lead to cash flow, universities have to pay the cost of the patent plus maintanance fees out of strained budgets. Foreign fees can add up to large cash payouts every year.

At a dinner recently, I had the good fortune to dine with one of the rock stars of our field- a true headliner. This fellow had met the King of Sweden and has basked in the accolades of we minor players and roadies ever since.  For good reason- he was exceptionally productive.

After the sixth bottle of wine had been drained at our table, jaws were wagging and bad jokes and war stories were making the rounds. Eventually the rock star lamented that he was tired of writing patents and wanted to get away from intellectual property.  Working with lawyers just took too much time.

Another acquaintance is also a rock star who has met the King of Sweden. He actually is in the licensing business with a company on the side and students who do, or at least used to do, research for their degrees that was also considered to be intellectual property.  He too has a list of patents longer than your arm.

I am betraying no secrets here. Patents are public documents. University patenting is well down the road since the public law changed.

I’ve written about this topic before. The nature of IP and the academy has changed considerably since Bayh-Dole has allowed universities to apply for patents that were funded with public funds.

But the question for today is this:  Of what value are patents on an academic resume? Should a WO patent weigh as much as a JACS paper. Should a US patent weight the same as a JOC paper? What if a candidate has more patents than papers? Should patents lead to tenure? How should this calculation work?

A patent is not trivial or cheap. A patent application has to survive a large amount of a certain type of rigor in the examination process. A patent may have involved a good deal of scholarship. A good patent may teach and claim compositions of matter and processes that are truly ground breaking.

But a bad patent based on work that was never actually done can share the same playing field as one that is genuine and valuable. The rigor of examination is more of a statutory process relating to obviousness, novelty, and utility. A citizen or organization is entitled to a patent under the Constitution, provided that certain conditions are met.

Nobody is entitled to a scientific paper. Scientific societies are in the business of encouraging scholarship by providing a venue for the screening and dissemination of written works by investigators. There is a pecking order in all fields, and chemistry is no different. A layered ordering of prestige and glory definitely exists and few are shy in their opinions about such ranking.

It is hard to argue that the scholarly path is not in the direction of maximum credibility. Patents are not officially peer reviewed by fellow workers in the field. But the patent literature is a vast reservoir of credible technical information that I think may be widely underappreciated.

So while a patent probably shouldn’t carry the same weight as a refereed paper in terms of scholarship, a patent can in principle represent a large amount of successful R&D. I would argue that it can be regarded as a type of commercial accomplishment that is worthy of a place on a resume.

A patent is, after all, a property right that can be bought and sold like a mining claim or mineral rights. It is a type of holding owned by the assignee but not necessarily the inventor. Patents also enjoy the assumption of validity by the courts, so knocking one down requires some determination and money by a challenger. A scholarly work requires only another paper contradicting the results to be brought under the unblinking eye of scrutiny.

In summary, I would offer that a published paper confers a sort of warranty of scholarship, knowledge, and expertise. A patent confers a property right. A patent may teach a good deal about certain arts and may well be bullet-proof in its authenticity. But a patent is not in the same league as a paper and shouldn’t be regarded as equivalent to a scholarly publication. However, a patent does represent a very real type of accomplishment that may be substantial, so discounting them should not be done either. Actually, a patent is one of the few real measures of accomplishment in a secretive industry. Patents are a plus and should figure into the total profile of a candidate.

Shermer’s “Mind of the Market”

Google has been posting a series of interesting talks by contemporary authors. This talk is by Michael Shermer, author of Mind of the Market, and editor of the popular magazine Skeptic. It is a lengthy 53 minute video, but I would highly recommend it. I think Shermer has a good grasp on the anthropology of our present world.

This is off-topic, but useful. This link gives a bunch of really good hints on how to save money for your start-up company.

Incident Attenuation in Chemical Plant Design

If you work in a location that handles or processes hazardous materials, eventually you have to come to grips with the matter of risk and accidents. It is possible to design procedures that prevent certain kinds of accidents and casualties.  It is possible to install devices and automated contrivances that can eliminate specific failures and the resulting cascade of multistage calamities that might follow.

Over time and with plenty of thought, a chemical plant can be fool-proofed to a large extent. But in the end, residual margins of safety depend on the man-machine interface. People have to undergo recurrent training and certain staff must be assigned to specialize in safety.

All devices have a failure rate. The rate may be small or large. A device may fail safely or not. Most chemical plants are, to a large extent, hand built. They are fabricated by skilled tradesmen who connect pre-fabricated parts to one-of-a-kind assemblies built on-site. In this way, expertise is captured from the plant designers, contractors, and the manufacturers of the installed equipment.  In the end though, it is up to the designers to assure that there is compatibility and some margin of overdesign in the finished facility.

While it is possible to assemble a facility from the very best equipment, the fascinating question of design for the attenuation of accident propagation is not often discussed, at least openly.  Accidents can usually be reduced to a few characteristic phases. They are initiation, propagation, and termination. 

An incident begins with an initiating event. Some release of hazardous energy is presented to the surroundings that may begin a propagation of undesired events. Events can propagate in series or parallel chains.  Hazardous energy can be electrical, chemical, or mechanical. The initiation is the tipping of a domino as a triggering event that causes the release of other hazardous conditions to ensue. Eventually, the propagation of the hazardous energy release is suppressed, extinguished, or simply exhausted in the termination phase.

One of the best ways of learning about the phenomenon of accidents is reading about them. A website worth visiting is the US Chemical and Hazard Investigation Board. It is useful for chemists and engineers to study the anlyses of the CSB and gain useful insight into the dynamics of chemical plant accidents.

It is possible to configure a chemical plant in such a manner as to attenuate the propagation of hazardous energy during an incident. In general, a large distance between reservoirs of potential energy is the easiest solution. Explosives manufacturers have known this for a long time. One well known German manufacturer of energetic materials has a manufacturing site spread over a large rural area and has built in bunkers with berms and trees to attenuate the propagation of shockwaves and allow flying fragments to land safely in an uninhabited area.  Fortunately, not many manufacturers have processes and products requiring this kind of design consideration.

Situations of “ordinary” risk magnitude do require some thought, however. Consider the storage of drums of flammable materials. Most companies that handle palletized drums of flammable liquids meet the minimal fire and insurance codes for the handling of these materials.

But consider this. What if a forklift driver spears a drum of solvent with his lift, and then in a panic, backs up and pulls the fork out of the drum resulting in a spill? At this point, policy and regulations are irrelevant. The only question is this-  Where does the liquid and the potential fire go?

Indoor storage of flammable materials requires fire suppression. Fire suppression is not the same as fire extinguishment. It is about knocking down the fire to a manageable level for emergency egress, to suppress the spread of the fire, and for firefighters to make some kind of attempt to extinguish the blaze. This is routine firefighter stuff.

What is less than routine, however, is the issue of BLEVE’s. I have written on this phenomenon previously.  Fire suppression is one thing, but BLEVE’s – Boiling Liquid Expanding Vapor Explosions- are quite another matter to deal with.

This is where a well designed facility with passive architectural features to attenuate the spread of hazardous energy can be helpful. An indoor BLEVE is virtually assured to accelerate the pace of a disaster.  So, in the planning phase of a plant, it is important to consider how energy release during an accident may propagate.  Drummed flammable liquids should be isolated from work areas and egress paths. This is pretty obvious to initial designers, but not necessarily years down the road during an expansion.

Consideration should be given to the anticipated direction in which energy is released. Where possible, energy should be released away from populated areas and away from major capital equipment. A fire in a materials storage area shouldn’t lead to an extended plant shutdown due to damaged process equipment. Segregation is key to plant safety and business viability.

Smoke is a potential killer and there are architectural tricks that can add provide slightly greater safety margins. Ceilings designed to collect and channel smoke out of the space could reduce the likelihood of suffocation of stranded workers and suppress the chances of a flashover. Smoke curtains properly placed can channel smoke away from hallways and the resulting spread.

Another concern is the fate of spilled flammable liquids in a storage area. Where should the spill go? Should the spill be concentrated in a small space or channeled to another space where a fire can burn with lower negative consequence? Nobody likes to pay for an overengineered warehouse, but fire resistant partitions in a solvent storage area can go a long way toward the isolation of a fire and attenuation of a larger scale calamity.

One major plant accident I am familiar with has a number of attributes that other operators would do well to consider.  A 750 gallon reactor explosion resulted in the complete fragmentation of the vessel.  A few pieces ejected from the hole in the roof were found lodged in the walls of neighboring structures off-site.  Fortunately, this reactor was in an enclosed space with no other reactors or stored hazardous materials. In one way, this accident was isolated due to passive attributes. However, the building space was interconnected to other spaces by a series of adjacent rooms and hallways. While fragmentation and fire damage were contained due to the happy fortune of isolation, the shockwave was able to follow all of the connected and enclosed pathways.  The connected pathways were a convenience to the workers, but this feature channeled a pressure wave throughout the entire facility, lifting the roof enough to damage large -remote- sections of it as well as badly damaging overhead doors and windows throughout the facility.

Take home lessons? 1) Leave open space walkways between production and storage buildings and the rest of the facility. Collateral damage is likely to be suppressed with this cheap, passive feature. 2) isolate and dedicate certain vessels to hazardous operations. 3) Store hazardous materials well away from processing areas. Storage and processing have their own hazards and a disaster in one area should not be allowed to propagate to the other.

The matter of flammable solvent storage and accident attenuation is only partially solved with enclosed flammable materials lockers. It seems to me that some research should be done to advance the level of best practices in this area.

Sigh

What a horrible week.  >>>>>>***Sarcastic comment stricken from the record***<<<<<  Things have gotten too Machiavellian.

Let’s talk about sunshine and daisies instead:  Some things about Th’ Gaussling that may not be widely known- I wear a Mickey Mouse watch, even on business trips, and I am a daily user of a pocket protector. My current pocket protector is emblazoned with the logo “Buca di Beppo”.  I’m considering having some Lamentations on Chemistry pocket protectors printed up for distribution from this site.

Email Etiquette- Going Nuclear

A pet peeve I have with my some fellow adult co-workers is their bad habit of excessive cc’ing people on emails. The most pernicious version of this is an email where a list of grievances is sent around with the conspicuous presence of some upper level manager carbon copied, or worse, blind copied.

This habit is a transparent kind of tattle-tale leverage used in the art of persuasion. Once someone has “publically” complained to upper level folks, everyone else has no choice but to opt for CYA.  It is like a nulcear weapon- once released, it knocks everyone down. I refer to these situations as “going nuclear”.

People feel that they have to respond in kind.  One email escalates to many. Soon, there is a flurry of emails clogging the inboxes of those trapped in this fetid tidal pool. Eventually, the tempest dies down leaving the boss wondering about the judgement and temperament of the staff. 

The worst kind of cc is the bc, or blind copy. This method is favored by practitioners of the dark arts. It is a truly reprehensible practice and people who do it should be hunted down like the rabid  curs they are and tarred and feathered. Neutered, maybe.

Ab Initio Chemical Plant Design

So, dear reader. If you were going to design a general/multi-purpose chemical plant capable of doing a wide variety of chemical transformations, what kind of features would you install now that you’ve had some experience in the field? No high pressure vessels, just ambient to 80 or 100 psi. I’m talking about a plant with 50 to 2000 gallon reactors- say, 8 of them. What kind of configurations would be desirable starting from the ground up?

No GMP capacity- too bloody expensive. We don’t want to do API’s.  No gas phase chemistry. No scary oxidation chemistry or energetic materials.  Just the kind of garden variety specialty organic or inorganic compounds and transformations that you might find in the Aldrich catalog.  Synthons, reagents, etc.

One interesting thing to ponder are possibilities with the use of passive architectural features to attenuate the propagation of upset or emergency conditions.